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Press Releases

Taking the Helm of Europe's SIMAP Consortium,
Compugen Aims to Build Kinetic Modeling Skills - 3/10/06
 Read here

Compugen to Lead $3.7M EC-Funded MAP-Kinase Pathway Consortium - 7/03/06
 Read here (English) and here (Hebrew)

Compugen's Press Release-European Commission to Fund SIMAP Consortium - 7/03/06
 Read here

Sticky Ends Online- Compugen Leads Consortium to Model Cancer-Related Kinase Pathway - 03/07/2006
 Read here

GLASGOW University Press Release - 15/03/06
 Read here

COMPcoverage following SIMAP PR.docse - 07/03/06
 Read here

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Press Clippings
News - Europe's Information Society Newsroom - 25/02/08
 Read here (Copied version)

Compugen to Lead $3.7M EC-Funded MAP-Kinase Pathway Consortium
GenomeWeb Daily News - 03/07/2006
 Read here

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Public Reports
SPACE
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Presentations
Presentations from SIMAP Computational Workshop:
 Compugen: Introduction to modeling chemical systems
 Aureus-Pharma: Challenges in designing chemical and biological database from scientific literature. The Aureus Pharma case study
 Compugen : Modeling with Cell Designer
 Aureus: Using Aureus Data Base
 Glasgow University: Text-mining for biomedicine- Intro
 Glasgow University: Text-mining for biomedicine- Terrier
 Compugen: Parameter estimation from wet data of several labs
 Glasgow University: The BioNessie workbench-Bionessie
 Glasgow University: The BioNessie workbench-MC2ModelCheck

SIMAP Prospect
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SIMAP Public Presentation
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SIMAP Articles
An interview was given to BioInform upon their request on SIMAP and Compugen & Aureus role in the project. An article was published in the same journal afterwards. 
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Functional analyses and Molecular modeling of two c-Kit mutations responsible for Imatinib secondary resistance in GIST patients. 
 Tamborini E, Pricl S, Negri T, Lagonigro ML, Miselli F, Greco A, Gronchi A, Casali  PG, Ferrone M, Fermeglia M,  Pierotti MA, Pilotti S. 
Oncogene, 2006, 25: 6140-6 (INT)
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c-Kit/PDGFRA Gene Status Alterations Possibly Related to Primary Imatinib Resistance in Gastrointestinal Stromal Tumors. 
Francesca Miselli, Paola Casieri, Tiziana Negri, Marta Orsenigo, M. Stefania Lagonigro, Alessandro Gronchi, Marco Fiore, Paolo G. Casali, Rossella Bertulli, Antonino Carbone, Marco A. Pierotti, Elena Tamborini and Silvana Pilotti
Clin Cancer Res. 13 2369 (2007).
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A sporadic multiple GIST with unusual pathological, molecular and genetic features
Miselli F, Conca E, Casieri P, Grosso F, Schiavo M, Tamborini E, Pilotti S. 
Am J Surg Pathol. 32, 340 (2008).
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Transcriptomal profiling of site-specific Ras signals
Agudo-Ibanez L., Nunez F., Calvo F., Berenjeno I.M, Bustelo X.R., and Crespo P. "Transcriptomal profiling of site-specific Ras signals".  Cell. Signal.., 19, 2264-2276. (2007).
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Regulation of MAPKs by growth factors and receptor tyrosine kinase. 
Katz M, Amit I and Yarden Y. (2007)
Biochim. Biophys. Acta: (Epub ahead of publication)
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Role of Non-phosphorylated Activation Loop Residues in Determining ERK2 Dephosphorylation Activity, and Subcellular Localization 
Bendetz-Nezer, S., and R Seger, R. (2007) 
Role of non-phosphorylated activation loop residues in determining ERK2 dephosphorylation, activity, and subcellular localization. 
J. Biol. Chem. (2007), 282, 25114-25122.
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Calcium-mediated interactions regulate the subcellular localization of extracellular signal-regulated kinases (ERKs) 
Chuderland, D., Marmor, G., Shainskaya, A., and Seger, R. (2007). 
J. Biol. Chem. (2008) 
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Compugen Profile- As appeared in "Future Magazine":
Compugen's mission is to be the world leader in the discovery and licensing of product candidates to the drug and diagnostic industry. The Company's powerful discovery engines enable the predictive discovery of numerous potential therapeutics and diagnostic biomarkers.
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Role of Non-phosphorylated Activation Loop Residues in Determining ERK2 Dephosphorylation, Activity, and Subcellular Localization

Sarit Bendetz-Nezer and Rony Seger

From the Department of Biological Regulation, Weizmann institute of Science

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SH2B1b adaptor is a key enhancer of RET tyrosine kinase signaling

S Donatello, A Fiorino, D DeglfInnocenti, L Alberti, C Miranda, L Gorla,

I Bongarzone, MG Rizzetti, MA Pierotti and MG Borrello

Department of Experimental Oncology, Research Unit no. 3, Milan, Italy; Department of Experimental Oncology, Research Unit no. 4, Milan, Italy; Scientific Direction, IRCCS Istituto Nazionale Tumori Foundation, Milan, Italy and FIRC Institute of Molecular Oncology Foundation, Milan, Italy

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SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML)

Nicolas Rodriguez , Marco Donizelli and Nicolas Le Novère 

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; 

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Related Articles
Presentation of conference paper: David Gilbert and Monika Heiner, From Petri Nets to Differential Equations - 
An Integrative Approach for Biochemical Network Analysis, 27th International Conference on Application and Theory of Petri Nets and other models of concurrency (ATPN06), Turku, Finland, June 26-30, 2006. Proceedings; Editors: Susanna Donatelli, P. S. Thiagarajan; LNCS 4024 / 2006, pp. 181-200, ISBN: 3-540-34699-6 (GU) 

http//www.brc.dcs.gla.ac.uk/~drg/publications/conferences/icatpn2006_17.pdf

https://commerce.metapress.com/content/l85l6147038t012j/resource-secured/?target=fulltext.pdf&sid=2wmxvl45ndbfsq45va0nc045&sh=www.springerlink.com

A global analysis of cross-talk in a mammalian cellular signalling network
Nature Cell Biology Published online: 14 May 2006; | doi:10.1038/ncb1418
Madhusudan Natarajan, Keng-Mean Lin, Robert C. Hsueh, Paul C. Sternweis & Rama Ranganathan.
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Targeting tyrosine kinases in cancer: the second wave.
Oncology Program, Vall d'Hebron University Hospital and Vall d'Hebron Research Institute, Universidad Autonoma de Barcelona, Barcelona 08035, Spain.
Baselga J.
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